Structure of PDB 1ub3 Chain D

Receptor sequence
>1ub3D (length=211) Species: 274 (Thermus thermophilus) [Search protein sequence]
DLAAHIDHTLLKPTATLEEVAKAAEEALEYGFYGLCIPPSYVAWVRARYP
HAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGD
LDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLK
TSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASR
LGTSSGVALVA
3D structure
PDB1ub3 Structure of aldolase from Thermus thermophilus HB8 showing the contribution of oligomeric state to thermostability.
ChainD
Resolution1.4 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) D89 K151 K180
Catalytic site (residue number reindexed from 1) D88 K150 K179
Enzyme Commision number 4.1.2.4: deoxyribose-phosphate aldolase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 HPD D K151 T154 G183 R186 G203 T204 S205 K150 T153 G182 R185 G202 T203 S204
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004139 deoxyribose-phosphate aldolase activity
GO:0016829 lyase activity
Biological Process
GO:0006018 2-deoxyribose 1-phosphate catabolic process
GO:0009264 deoxyribonucleotide catabolic process
GO:0016052 carbohydrate catabolic process
GO:0046386 deoxyribose phosphate catabolic process
Cellular Component
GO:0005737 cytoplasm

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External links
PDB RCSB:1ub3, PDBe:1ub3, PDBj:1ub3
PDBsum1ub3
PubMed15388928
UniProtQ5SJ28|DEOC_THET8 Deoxyribose-phosphate aldolase (Gene Name=deoC)

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