Structure of PDB 1qvo Chain D

Receptor sequence
>1qvoD (length=275) Species: 9606 (Homo sapiens) [Search protein sequence]
GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAP
WIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYG
CDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAA
HAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT
LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVP
SGEEQRYTCHVQHEGLPKPLTLRWE
3D structure
PDB1qvo Structures of HLA-A*1101 complexed with immunodominant nonamer and decamer HIV-1 epitopes clearly reveal the presence of a middle, secondary anchor residue.
ChainD
Resolution2.22 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D Y7 E63 N66 A69 Q70 T73 V76 D77 Y84 Y99 R114 D116 W133 T143 K146 W147 A152 Q155 Q156 Y159 R163 W167 Y171 Y7 E63 N66 A69 Q70 T73 V76 D77 Y84 Y99 R114 D116 W133 T143 K146 W147 A152 Q155 Q156 Y159 R163 W167 Y171
External links
PDB RCSB:1qvo, PDBe:1qvo, PDBj:1qvo
PDBsum1qvo
PubMed15128805
UniProtP04439|HLAA_HUMAN HLA class I histocompatibility antigen, A alpha chain (Gene Name=HLA-A)

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