Structure of PDB 1qdc Chain D

Receptor sequence
>1qdcD (length=237) Species: 3823 (Canavalia ensiformis) [Search protein sequence]
ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTA
HIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLY
KETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGT
DGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIK
SPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN
3D structure
PDB1qdc The crystal structures of Man(alpha1-3)Man(alpha1-O)Me and Man(alpha1-6)Man(alpha1-O)Me in complex with concanavalin A.
ChainD
Resolution2.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MMA D Y12 L99 Y12 L99
BS02 MAN D Y12 G98 L99 Y100 A207 D208 G227 R228 Y12 G98 L99 Y100 A207 D208 G227 R228
BS03 MN D E8 D10 D19 H24 E8 D10 D19 H24
BS04 CA D D10 Y12 N14 D19 D10 Y12 N14 D19
Gene Ontology
Molecular Function
GO:0005537 D-mannose binding
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding
GO:0090729 toxin activity
Biological Process
GO:0035821 modulation of process of another organism

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:1qdc, PDBe:1qdc, PDBj:1qdc
PDBsum1qdc
PubMed10506175
UniProtP55915|CONA_CANBR Concanavalin-Br

[Back to BioLiP]