Structure of PDB 1m8v Chain D

Receptor sequence
>1m8vD (length=71) Species: 29292 (Pyrococcus abyssi) [Search protein sequence]
ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGE
VVKRYGKIVIRGDNVLAISPT
3D structure
PDB1m8v Crystal Structure of Pyrococcus abyssii Sm core and its Complex with RNA: Common Features of RNA-binding in Archaea and Eukarya
ChainD
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D R404 P405 L406 D407 H410 Y434 R2 P3 L4 D5 H8 Y32
BS02 U D H437 N439 R463 G464 D465 H35 N37 R61 G62 D63
Gene Ontology
Biological Process
GO:0000398 mRNA splicing, via spliceosome
Cellular Component
GO:0120114 Sm-like protein family complex
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1m8v, PDBe:1m8v, PDBj:1m8v
PDBsum1m8v
PubMed12409299
UniProtQ9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein (Gene Name=PYRAB06500)

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