Structure of PDB 1d9k Chain D

Receptor sequence
>1d9kD (length=188) Species: 10090 (Mus musculus) [Search protein sequence]
GSERHFVHQFQPFCYFTNGTQRIRLVIRYIYNREEYVRFDSDVGEYRAVT
ELGRPDAEYWNKQYLERTRAELDTVCRHNYEKTETPTSLRRLEQPSVVIS
LSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGD
WTFQVLVMLEMTPRRGEVYTCHVEHPSLKSPITVEWRA
3D structure
PDB1d9k The crystal structure of a T cell receptor in complex with peptide and MHC class II.
ChainD
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D F11 Y30 Y47 P56 D57 Y60 W61 Y67 E74 V78 H81 N82 K84A T85 F10 Y29 Y46 P55 D56 Y59 W60 Y64 E71 V75 H78 N79 K82 T83
Gene Ontology
Biological Process
GO:0006955 immune response
GO:0019882 antigen processing and presentation
Cellular Component
GO:0016020 membrane
GO:0042613 MHC class II protein complex

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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1d9k, PDBe:1d9k, PDBj:1d9k
PDBsum1d9k
PubMed10583947
UniProtP06343|HB2K_MOUSE H-2 class II histocompatibility antigen, A-K beta chain (Gene Name=H2-Ab1)

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