Structure of PDB 9cai Chain Ch

Receptor sequence

>9caiCh (length=122) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

TKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVR
KNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELS
LRSAKQQAKSRNQAVRKFAVKA

3D structure

PDB

9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.

Chain

Resolution

2.59 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Ch	K5 C6 K7 R10 K35 L44 S45 R48 R51 K52 A55 R56 L58 T59 N62 Q63 K66 R70 I81 R84 K86 T88 R89 R92	K4 C5 K6 R9 K34 L43 S44 R47 R50 K51 A54 R55 L57 T58 N61 Q62 K65 R69 I80 R83 K85 T87 R88 R91
BS02	rna	Ch	Y78 K79 R84 L85 R93 H98 E99 A105 K106 K110 R112 N113	Y77 K78 R83 L84 R92 H97 E98 A104 K105 K109 R111 N112

External links

PDB	RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum	9cai
PubMed	39209556
UniProt	P34662\|RL35_CAEEL Large ribosomal subunit protein uL29 (Gene Name=rpl-35)