Structure of PDB 9cai Chain Cf

Receptor sequence

>9caiCf (length=117) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

RRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAG
KRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIP
PSALGKRIRVLLYPSNI

3D structure

PDB

9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.

Chain

Resolution

2.59 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Cf	R8 R9 S11 T14 T15 R17 Y19 K28 R29 G30 L31 R32 Q34 E36 K49 A56 G57 R59 L63 Y64 K65 H67 N68 T70 L71 K72 T73 H75 V77 T79 R80 T81 R82 A83 W85 K87 T89 R90 H92 G93 N94 A95 R99 H103 H104 N105 P107 P108 S109 L111 K113 R114 R116 N123	R1 R2 S4 T7 T8 R10 Y12 K21 R22 G23 L24 R25 Q27 E29 K42 A49 G50 R52 L56 Y57 K58 H60 N61 T63 L64 K65 T66 H68 V70 T72 R73 T74 R75 A76 W78 K80 T82 R83 H85 G86 N87 A88 R92 H96 H97 N98 P100 P101 S102 L104 K106 R107 R109 N116

External links

PDB	RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum	9cai
PubMed	39209556
UniProt	P49180\|RL35A_CAEEL Large ribosomal subunit protein eL33 (Gene Name=rpl-33)