Structure of PDB 4v88 Chain Cf

Receptor sequence

>4v88Cf (length=76) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]

GPPPPPPPPPPPPPPPPPPPPPPPAVLSYYKVDAEGKVTKLRRECSNPTC
GAGVFLANHKDRLYCGKCHSVYKVNA

3D structure

PDB

4v88 The structure of the eukaryotic ribosome at 3.0 angstrom resolution.

Chain

Resolution

3.0 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Cf	X78 X79 X87 X91 X94 X97 X101 R118 V130 F131 L132 A133 N134 H135 R138 Y140 G142 K143 H145 S146 K149	X2 X3 X11 X15 X18 X21 X25 R42 V54 F55 L56 A57 N58 H59 R62 Y64 G66 K67 H69 S70 K73

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0008270	zinc ion binding
GO:0031386	protein tag activity
GO:0031625	ubiquitin protein ligase binding
GO:0046872	metal ion binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0002109	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S)
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0016567	protein ubiquitination
GO:0019941	modification-dependent protein catabolic process
GO:0042254	ribosome biogenesis
GO:1990145	maintenance of translational fidelity

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:0044391	ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4v88, PDBe:4v88, PDBj:4v88
PDBsum	4v88
PubMed	22096102
UniProt	P05759\|RS31_YEAST Ubiquitin-ribosomal protein eS31 fusion protein (Gene Name=RPS31)