Structure of PDB 8i9t Chain Cb

Receptor sequence
>8i9tCb (length=560) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]
MPKRAVSPAPSENEVDIAGSLFAGGFQAMGLDANLLRAIARKGFSVPTPI
QRKTIPLILERRDVVGMARTGSGKTAAFVIPMIERLKAHSARFGARALVL
SPSRELALQTLKVVKELGKGTDLKTVLLVGGDSLEEQFGLMATNPDIIIA
TPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSR
QTLLFSATLPSSLVEFTRAGLQDPVLVRLDAETKVSPDLESAFFSVKSGE
KEGALLHILYDIIKMPLGDPPKPTEHSTIIFTATKHHVEYISNLLRLAGF
SVSYVYGSLDQTARKIQVDNFRRGRTNILVVTDVAARGIDIPVLANVINY
DFPPQPKIFVHRVGRTARAGQRGWAYALVRESDLPYLLDLQLFLGRRLVL
GREEKDPSFARDIVVGSLKRVELENNVEWVNKVLHENEDIGALKRVTAKA
EKLYMKTRNPASSQSAKRAREVIVSKGWGQLHAIFGEEAANEEQVRDNLL
SKITGYKPQETIFEINKAAEAVRSFRQRIGPRKKAPKEADKWRDDYEVRK
KRVAEAKEKR
3D structure
PDB8i9t Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis.
ChainCb
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.13: RNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Cb M1 K3 R170 G197 L200 H223 R622 P630 R631 K854 P856 K861 R863 M1 K3 R104 G131 L134 H157 R523 P531 R532 K534 P536 K541 R543
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003724 RNA helicase activity
GO:0005524 ATP binding

View graph for
Molecular Function
External links
PDB RCSB:8i9t, PDBe:8i9t, PDBj:8i9t
PDBsum8i9t
PubMed37129998
UniProtG0S5S8

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