Structure of PDB 9cai Chain CT

Receptor sequence

>9caiCT (length=160) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

TNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKG
MPFKAYHGRTGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKC
RTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVTTQNNEPEL
LAPLRFEIVA

3D structure

PDB

9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.

Chain

Resolution

2.59 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	CT	R20 H26 S28	R19 H25 S27
BS02	rna	CT	T2 N3 S4 K5 G6 L7 R8 R9 G10 R12 Y13 A16 R17 F19 H22 G23 L39 K43 G46 A47 Q49 K50 G51 F54 K55 Y57 G59 T61 T68 R69 A71 N77 K78 V80 R81 L85 K87 R88 N90 R92 C101 D104 F105 R108 V109 N112 D113 R116 L129 K130 R131	T1 N2 S3 K4 G5 L6 R7 R8 G9 R11 Y12 A15 R16 F18 H21 G22 L38 K42 G45 A46 Q48 K49 G50 F53 K54 Y56 G58 T60 T67 R68 A70 N76 K77 V79 R80 L84 K86 R87 N89 R91 C100 D103 F104 R107 V108 N111 D112 R115 L128 K129 R130

External links

PDB	RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum	9cai
PubMed	39209556
UniProt	P34334\|RL21_CAEEL Large ribosomal subunit protein eL21 (Gene Name=rpl-21)

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