Structure of PDB 8pv4 Chain CR

Receptor sequence
>8pv4CR (length=390) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]
ADLVNLQYKIRRDPKSYAQEFYDQWLAYDAQRQIFFSSPATASSEDIKKF
HDLVDLVAHVADLYPDITAPFPDHLKQLLTQHHTTLDKDLREKVVGSLVL
LRRKDVIDSVSLLTTLFPILISSPSKSLRTLIYTKIISDLRESNAKATNH
KLNRTIQTVLHNLLTSDRTSSKGLWACRITRELWRRQIWTDARPCDVMKE
ACLSDNEKVVVGGCRFFLGGDKNFSALHLINDPQGFAEKLFQKHLQNLKN
KFTLENRLLVLQLVTRLVGLHKLTVLPLYSWFVRYLTPKQLNVTTFLACL
AQATHNLVPPDVIEPLVVKIANEFVSEASAAEVAAAGLNAIREVAMRQPL
CMSETLLQDLVLYQKSKDKGVMMAAKGLQSLYREVYPEML
3D structure
PDB8pv4 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation.
ChainCR
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna CR K148 S151 R154 K159 H163 K164 R198 R199 N292 K135 S138 R141 K146 H150 K151 R185 R186 N223
BS02 rna CR K318 K320 K249 K251
Gene Ontology
Biological Process
GO:0000055 ribosomal large subunit export from nucleus
GO:0015031 protein transport
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus

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Biological Process
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Cellular Component
External links
PDB RCSB:8pv4, PDBe:8pv4, PDBj:8pv4
PDBsum8pv4
PubMed37921038
UniProtG0S215|SDA1_CHATD Protein SDA1 (Gene Name=SDA1)

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