Structure of PDB 8pv3 Chain CM

Receptor sequence
>8pv3CM (length=217) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]
LVPETLLKKRKSQEKARAERAAAVIFKRAEKYVKEYREQEREKIRLARIA
KQQGAKLVFVIRIKGINKIPPKPRKILQLLRLRQINNGVFVKVTKATAEM
IKIVEPWVAYGYPNLKSVRELIYKRGYGKVNGQRIPLTDNAIIEENLGKY
GIICIEDLIHEIFTVGPNFKQAANFLWPFKLSNPNGGFRPRKFKHFIEGG
DLGNREEHINALIRAMN
3D structure
PDB8pv3 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation.
ChainCM
Resolution2.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna CM R32 F225 R20 F193
BS02 rna CM I50 F51 R53 E55 K68 R73 K76 I25 F26 R28 E30 K43 R48 K51
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8pv3, PDBe:8pv3, PDBj:8pv3
PDBsum8pv3
PubMed37921038
UniProtG0SFL0

[Back to BioLiP]