Structure of PDB 4v5b Chain CM

Receptor sequence

>4v5bCM (length=136) Species: 562 (Escherichia coli)

MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAAR
RAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGK
VLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM

3D structure

• PDB: 4v5b A Peptide Deformylase-Ribosome Complex Reveals Mechanism of Nascent Chain Processing.
• Chain: CM
• Resolution: 3.74 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	CM	A21 Q22	A21 Q22
BS02	rna	CM	T7 K8 F9 H13 R16 N17 R18 G19 T24 F28 R40 T42 R44 Q45 A48 R55 W64 I65 R66 F68 D70 T74 E75 K76 L78 R81 M82 K84 G85 F117 K118 L119 A121 K123 M136	T7 K8 F9 H13 R16 N17 R18 G19 T24 F28 R40 T42 R44 Q45 A48 R55 W64 I65 R66 F68 D70 T74 E75 K76 L78 R81 M82 K84 G85 F117 K118 L119 A121 K123 M136

Gene Ontology

Molecular Function

• GO:0000049 tRNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0000027 ribosomal large subunit assembly
• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v5b, PDBe:4v5b, PDBj:4v5b
• PDBsum: 4v5b
• PubMed: 18288106
• UniProt: P0ADY7|RL16_ECOLI Large ribosomal subunit protein uL16 (Gene Name=rplP)