Structure of PDB 4v5b Chain CL

Receptor sequence

>4v5bCL (length=144) Species: 562 (Escherichia coli)

MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGF
EGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANI
IGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE

3D structure

• PDB: 4v5b A Peptide Deformylase-Ribosome Complex Reveals Mechanism of Nascent Chain Processing.
• Chain: CL
• Resolution: 3.74 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	CL	K14 R21 G22 I23 S25 G26 L27 K29 T30 G31 G32 R33 K36 G37 Q38 K39 S40 S42 G45 R47 R48 Q54 M55 P56 Y58 R59 R60 L61 P62 K63 F64 G65 F66 T67 R69 K70 T74 E76 R78 I100 K109 I111 L112 T128 G130	K14 R21 G22 I23 S25 G26 L27 K29 T30 G31 G32 R33 K36 G37 Q38 K39 S40 S42 G45 R47 R48 Q54 M55 P56 Y58 R59 R60 L61 P62 K63 F64 G65 F66 T67 R69 K70 T74 E76 R78 I100 K109 I111 L112 T128 G130
BS02	MG	CL	A98 N99	A98 N99

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0005515 protein binding
• GO:0019843 rRNA binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0015934 large ribosomal subunit
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v5b, PDBe:4v5b, PDBj:4v5b
• PDBsum: 4v5b
• PubMed: 18288106
• UniProt: P02413|RL15_ECOLI Large ribosomal subunit protein uL15 (Gene Name=rplO)