Structure of PDB 9cai Chain CI

Receptor sequence

>9caiCI (length=213) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

GRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVH
MMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINK
MLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEA
FRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQR
EHGPLTKWIENPI

3D structure

PDB

9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.

Chain

Resolution

2.59 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	CI	R110 L111	R109 L110
BS02	rna	CI	E56 R57 R201 E202 H203 G204 L206 W209	E55 R56 R200 E201 H202 G203 L205 W208
BS03	rna	CI	R3 R4 P5 A6 R7 K13 N14 K15 F22 K30 K39 E63 A64 K74 R90 H92 F94 R98 N100 S104 Q112 G114 M115 R116 A118 Y119 G120 R154 F157 K158 P160 R162 D193 G194 Q198	R2 R3 P4 A5 R6 K12 N13 K14 F21 K29 K38 E62 A63 K73 R89 H91 F93 R97 N99 S103 Q111 G113 M114 R115 A117 Y118 G119 R153 F156 K157 P159 R161 D192 G193 Q197

External links

PDB	RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum	9cai
PubMed	39209556
UniProt	Q09533\|RL10_CAEEL Large ribosomal subunit protein uL16 (Gene Name=rpl-10)

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