Structure of PDB 4v8i Chain CI

Receptor sequence

>4v8iCI (length=125) Species: 274 (Thermus thermophilus)

EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLR
AVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGF
LTRDARVVERKKYGKHKARRAPQYS

3D structure

• PDB: 4v8i How hibernation factors RMF, HPF, and YfiA turn off protein synthesis.
• Chain: CI
• Resolution: 2.7 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	CI	Q3 Y5 T7 R9 K11 E12 R16 F18 Y36 Q38 G39 Y62 R66 G67 G68 G69 K70 S71 Q73 R83 T103 R104 R107 V108 V109 E110 R111 K112 K113 Y114 G115 H117 R120 R121 A122 P123 Q124	Q2 Y4 T6 R8 K10 E11 R15 F17 Y35 Q37 G38 Y61 R65 G66 G67 G68 K69 S70 Q72 R82 T102 R103 R106 V107 V108 E109 R110 K111 K112 Y113 G114 H116 R119 R120 A121 P122 Q123

Gene Ontology

Molecular Function

• GO:0000049 tRNA binding
• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0015935 small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v8i, PDBe:4v8i, PDBj:4v8i
• PDBsum: 4v8i
• PubMed: 22605777
• UniProt: P80374|RS9_THET8 Small ribosomal subunit protein uS9 (Gene Name=rpsI)