Structure of PDB 4ujd Chain CH

Receptor sequence

>4ujdCH (length=191) Species: 9986 (Oryctolagus cuniculus)

SSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEV
GGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPK
PTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRL
IKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL

3D structure

• PDB: 4ujd Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires
• Chain: CH
• Resolution: 8.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	CH	K49 F63 Q97 R98 R99 I100 P102 K103 P104 T105 R106 K107 S108 R109 T110 K111 N112 K113 K115 R118 S119 R120 T121 L122 T123 L180	K46 F60 Q94 R95 R96 I97 P99 K100 P101 T102 R103 K104 S105 R106 T107 K108 N109 K110 K112 R115 S116 R117 T118 L119 T120 L177

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Mar 7 09:07:34 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '4ujd', asym_id = 'CH', title = 'Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='4ujd', asym_id='CH', title='Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4ujd', asym_id = 'CH'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4ujd', asym_id='CH')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>