Structure of PDB 9cai Chain CG

Receptor sequence

>9caiCG (length=221) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

KNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP
PTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARPNTVRH
GVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKA
SLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWG
GGVMSAKSDAKKLKIERARAR

3D structure

PDB

9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.

Chain

Resolution

2.59 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	CG	Y61 I62 Q65 R66 R94 H160 K186	Y33 I34 Q37 R38 R66 H121 K147
BS02	rna	CG	K35 R36 R38 F40 I42 Q44 Q47 P48 K49 V52 R54 F55 K57 K60 Y61 L71 R74 L75 K112 L115 H139 G140 V141 N142 T143 R146 N163 I167 K188 A189 R197 K198 T199 T200 A201 M243 S244 K246	K7 R8 R10 F12 I14 Q16 Q19 P20 K21 V24 R26 F27 K29 K32 Y33 L43 R46 L47 K84 L87 H100 G101 V102 N103 T104 R107 N124 I128 K149 A150 R158 K159 T160 T161 A162 M204 S205 K207

External links

PDB	RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum	9cai
PubMed	39209556
UniProt	Q966C6\|RL7A_CAEEL Large ribosomal subunit protein eL8 (Gene Name=rpl-7A)

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