Structure of PDB 9cai Chain CD

Receptor sequence

>9caiCD (length=289) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

VKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIV
RITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGL
LLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTT
TGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHV
ADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPA
AKKAAKPSKRHTAKRLTYDERKQRVADKKALLLQLKEQQ

3D structure

PDB

9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.

Chain

Resolution

2.59 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	CD	K10 F13 K14 V18 L20 R21 R22 R24 K27 T28 Y30 R33 R50 R54 T56 N57 K58 Q63 I69 E70 G71 D72 V74 Y79 N94 R151 K157 F180 Q184 R197 H202 V203 Y206 Y209 R220 Q221 S223 K224 F225 K255 K259 S261 R263 H264 T265 A266 R268 L269 Y271 R274 R277 V278 K281 K282	K7 F10 K11 V15 L17 R18 R19 R21 K24 T25 Y27 R30 R47 R51 T53 N54 K55 Q60 I66 E67 G68 D69 V71 Y76 N91 R148 K154 F177 Q181 R194 H199 V200 Y203 Y206 R217 Q218 S220 K221 F222 K252 K256 S258 R260 H261 T262 A263 R265 L266 Y268 R271 R274 V275 K278 K279
BS02	rna	CD	V4 K8 A11 R15 Y16 Q17 K19 R23 T28 R35 L36 K43 Y44 K48 R138 A139 P140 F141 L145 I147 L149 R151 T152 F159 H174 S175 R178	V1 K5 A8 R12 Y13 Q14 K16 R20 T25 R32 L33 K40 Y41 K45 R135 A136 P137 F138 L142 I144 L146 R148 T149 F156 H171 S172 R175

External links

PDB	RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum	9cai
PubMed	39209556
UniProt	P49405\|RL5_CAEEL Large ribosomal subunit protein uL18 (Gene Name=rpl-5)

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