Structure of PDB 5j4d Chain CD

Receptor sequence
>5j4dCD (length=88) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence]
PITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHH
SHRGLLMMVGQRRRLLRYLQREDPERYRALIEKLGIRG
3D structure
PDB5j4d Structural Basis for Translation Termination on a Pseudouridylated Stop Codon.
ChainCD
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna CD P2 K8 F18 D21 T22 G23 S24 Q28 L31 R35 R38 L39 H42 H46 K48 D49 H50 H51 S52 R54 G55 Q62 R64 R65 Y69 P1 K7 F17 D20 T21 G22 S23 Q27 L30 R34 R37 L38 H41 H45 K47 D48 H49 H50 S51 R53 G54 Q61 R63 R64 Y68
BS02 rna CD H53 L56 V60 H52 L55 V59
BS03 MG CD I3 R38 I2 R37
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5j4d, PDBe:5j4d, PDBj:5j4d
PDBsum5j4d
PubMed27107638
UniProtP62657|RS15_THET2 Small ribosomal subunit protein uS15 (Gene Name=rpsO)

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