Structure of PDB 8i9t Chain CC

Receptor sequence
>8i9tCC (length=289) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]
EILEPFVDPPRDRNYRIEKDANGGIRYVYDEIDPVYDSDDTDYNVPVNTI
GNIPLSFYDSYPHIGYDINGKKIMRPATGDALQNLLDSIEVPEGWTGLTD
PNTGKPLNLSRDELELIRKVQQGLIPDDVEDPYPDTVEWFTSVEEKMPLS
AAPEPKRRFIPSKNEAKQIMKLVRAIREGRILPYKPPEEREREEFYDLWQ
NEEPQPPNPMHIPAPKLPPPGYDLSYNPPPEYLPTKEEREEWEKMDPEDR
EKDYLPTKYDSLRKVPAWGNFVKERFERCMDLYLAPRVR
3D structure
PDB8i9t Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis.
ChainCC
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna CC A273 P275 K278 R279 R280 S284 E287 K289 M292 R296 R302 I303 A151 P153 K156 R157 R158 S162 E165 K167 M170 R174 R180 I181
Gene Ontology
Molecular Function
GO:0043021 ribonucleoprotein complex binding
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030687 preribosome, large subunit precursor
GO:0070545 PeBoW complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8i9t, PDBe:8i9t, PDBj:8i9t
PDBsum8i9t
PubMed37129998
UniProtG0SCK6|ERB1_CHATD Ribosome biogenesis protein ERB1 (Gene Name=ERB1)

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