Structure of PDB 6ywx Chain CC

Receptor sequence

>6ywxCC (length=438) Species: 367110 (Neurospora crassa OR74A) [Search protein sequence]

SASVIFSKYINNNNNKLIPFKIKNSDLGRTRYFPPISKEWKNSIYVFNHN
NLKNLPLFDININSLIKDYFNLQFKDKILFKKKRLSKVKVVSLNKIYASK
AEIKHTNTKAILTVYTFNREKISLYKKIKKLKKSFYFVFDKIISFSERVI
LSGVPVLPWITESHVNIWRKIIIASLYKELILLRKYKLRLDLNKYKFEEK
LLYRLNNLIMKYYNKKVEFNIVNMRSFLLNSDILTKILALKLKNRNARVI
KIMDVILNKANLPKINRVQEKASLIKSVDWNLLENKFKNLNLSFILNDAS
YAERNNLSELLNKLYYNVLLVSQKGVWALRSPAQPKVSSFAKAKKYAKIY
QIIFNSINYKNMGGLRLEIKGRLTKRYRADRSLFKVKWKGGLKNLDSSYK
GLSSVNMRGYAKPNVEYSIFTSKRRIGAFAVKGWVSGK

3D structure

PDB

6ywx Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi.

Chain

Resolution

3.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	CC	N30 N31 K32 K37 L43 G44 T46 R47 F49 R100 S102 K103 V104 R304 K313 K440 R442 R446 Y447 D450 R451 S452 G460 G461 L462 K463 S467 S468 S473 S474 N476 I489 K493 I496 G497 A500 K502	N14 N15 K16 K21 L27 G28 T30 R31 F33 R84 S86 K87 V88 R267 K276 K370 R372 R376 Y377 D380 R381 S382 G390 G391 L392 K393 S397 S398 S403 S404 N406 I419 K423 I426 G427 A430 K432

Gene Ontology

	Cellular Component
GO:0005739	mitochondrion
GO:0005840	ribosome
GO:1990904	ribonucleoprotein complex

View graph for
Cellular Component

External links

PDB	RCSB:6ywx, PDBe:6ywx, PDBj:6ywx
PDBsum	6ywx
PubMed	33056988
UniProt	P23351\|RMAR_NEUCR Small ribosomal subunit protein uS3m (Gene Name=var1)

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