Structure of PDB 9bh5 Chain CB

Receptor sequence

>9bh5CB (length=395) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKA
GMTHIVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRA
LTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFA
KLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHL
EKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKV
ACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGS
TEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQ
TKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE

3D structure

PDB

9bh5 High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.

Chain

Resolution

2.63 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	CB	S2 H3 K5 S7 A8 P9 R10 H11 G12 H13 G15 F16 P18 K19 K20 R21 R23 Y25 R26 K30 A31 K50 M53 T54 H55 G64 S65 A75 Y92 P96 P99 R100 A101 L102 T103 T104 W106 R117 F118 Y119 S120 N121 K124 S125 K126 K128 F130 K132 Y133 K152 Y156 R161 R172 R174 Q175 K176 K177 E182 T223 R224 G225 H226 G227 F228 G230 R234 K238 K239 R242 K243 T244 H245 K246 G247 R249 K250 V251 A252 C253 I254 G255 A256 W257 H258 P259 S260 R261 V262 F264 T265 R268 A269 Q271 F274 H276 R277 T278 I280 N281 M314 G315 P318 R319 G321 I322 R331 A333 V334 G336 K339 R340 I349 R354 S369 K370 G372 H373 T379 K382 M386 L389 K390 R391	S1 H2 K4 S6 A7 P8 R9 H10 G11 H12 G14 F15 P17 K18 K19 R20 R22 Y24 R25 K29 A30 K49 M52 T53 H54 G63 S64 A74 Y91 P95 P98 R99 A100 L101 T102 T103 W105 R116 F117 Y118 S119 N120 K123 S124 K125 K127 F129 K131 Y132 K151 Y155 R160 R171 R173 Q174 K175 K176 E181 T222 R223 G224 H225 G226 F227 G229 R233 K237 K238 R241 K242 T243 H244 K245 G246 R248 K249 V250 A251 C252 I253 G254 A255 W256 H257 P258 S259 R260 V261 F263 T264 R267 A268 Q270 F273 H275 R276 T277 I279 N280 M313 G314 P317 R318 G320 I321 R330 A332 V333 G335 K338 R339 I348 R353 S368 K369 G371 H372 T378 K381 M385 L388 K389 R390

External links

PDB	RCSB:9bh5, PDBe:9bh5, PDBj:9bh5
PDBsum	9bh5
PubMed	39209556
UniProt	P50880\|RL3_CAEEL Large ribosomal subunit protein uL3 (Gene Name=rpl-3)

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