Structure of PDB 8i9t Chain CB

Receptor sequence

>8i9tCB (length=260) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]

VDPDQTLKACKALLAHIKKAAAAPRPDGKQNLLADEESTVAETPIWLTLT
TKKHIHDSHRLQPGKIILPHPLNTSEEISVCLITADPQRFYKNAVADEFP
EDLRAKIGRVIDISHLKAKFKAYEAQRKLFSEHDVFLADTRIINRLPKAL
GKTFYKTTTKRPIPVVLMAQRDPLENANARPIPEIVAEIRKAIGAALVHL
SPSTNTAIKVGYANWEPEKLAANIETVIRELVERFVPQKWQNVRNFYVKG
PETAALPIYQ

3D structure

PDB

8i9t Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis.

Chain

Resolution

3.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	CB	S75 H76 L78 A102 K138 Y140 E141 R144 R158 N161 R162 P164 G168 K169 Y172 K173 T174 T175 T176 R206 S236 S238 N240 R279 K284 E287	S58 H59 L61 A85 K121 Y123 E124 R127 R141 N144 R145 P147 G151 K152 Y155 K156 T157 T158 T159 R171 S201 S203 N205 R244 K249 E252

Gene Ontology

	Molecular Function
GO:0003723	RNA binding

	Biological Process
GO:0000470	maturation of LSU-rRNA

	Cellular Component
GO:0022625	cytosolic large ribosomal subunit
GO:0030686	90S preribosome
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8i9t, PDBe:8i9t, PDBj:8i9t
PDBsum	8i9t
PubMed	37129998
UniProt	G0S7X0

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