Structure of PDB 6zvk Chain C2

Receptor sequence

>6zvkC2 (length=86) Species: 9986 (Oryctolagus cuniculus)

TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSA
KAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPK

3D structure

• PDB: 6zvk The Halastavi arva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism.
• Chain: C2
• Resolution: 3.49 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	C2	T2 K3 G4 T5 S6 F8 G9 K10 R11 R12 N13 T15 H16 K25 H28 Q30 R43 K44 R45 K46 Y47 N48 W49 S50 K52 R55 R56 T59 Y71 R75 E80	T1 K2 G3 T4 S5 F7 G8 K9 R10 R11 N12 T14 H15 K24 H27 Q29 R42 K43 R44 K45 Y46 N47 W48 S49 K51 R54 R55 T58 Y70 R74 E79
BS02	rna	C2	R20 R21 C22 Y39 G62 R63 M64 R65 H66 L67 Y71 R72 F74 H76 R79 G81 T82 P84 K87	R19 R20 C21 Y38 G61 R62 M63 R64 H65 L66 Y70 R71 F73 H75 R78 G80 T81 P83 K86
BS03	ZN	C2	C19 C22 C34	C18 C21 C33

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome

External links

• PDB: RCSB:6zvk, PDBe:6zvk, PDBj:6zvk
• PDBsum: 6zvk
• PubMed: 33296660
• UniProt: U3KPD5|RL37_RABIT Large ribosomal subunit protein eL37 (Gene Name=RPL37)