Structure of PDB 8yo4 Chain C

Receptor sequence

>8yo4C (length=284) Species: 2681598 (Escherichia phage T4) [Search protein sequence]

KVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVL
NSWGMSYADMLKNKELFDICAITGLVLGEKAFEEKEDGEWFTFELNGDTI
IVNENDEVQINGKWITVGELRKNLMKFVKIDSSSVDMKKYKLQNNVRRSI
KSSSMNYANVAIMTDADHDGLGSIYPSLLGFFSNWPELFEQGRIRFVKTP
VIIAQVGKKQEWFYTVAEYESAKDALPKHSIRYIKGLGSLEKSEYREMIQ
NPVYDVVKLPENWKELFEMLMGDNADLRKEWMSQ

3D structure

PDB

8yo4 structure of phage T4 topoisomerase II central domain bound with DNA

Chain

Resolution

3.2 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	C	R438 L442 N443 A667 R670	R46 L50 N51 A275 R278
BS02	dna	C	K396 E415 G416 D417 S418 R438 G439 K440 D561	K4 E23 G24 D25 S26 R46 G47 K48 D169
BS03	MG	C	D557 D559	D165 D167

External links

PDB	RCSB:8yo4, PDBe:8yo4, PDBj:8yo4
PDBsum	8yo4
PubMed

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