Structure of PDB 8vpi Chain C

Receptor sequence

>8vpiC (length=540) Species: 1496 (Clostridioides difficile) [Search protein sequence]

GIYYTPKIIVDYIVKKTLKNHDIIKNPYPRILDISCGCGNFLLEVYDILY
DLFEENIYELKKKYDENYWTVDNIHRHILNYCIYGADIDEKAISILKDSL
TNKIKINLFCCDSLKKKWRYKFDYIVGNPPYIGHKKLEKKYKKFLLEKYS
EVYKDKADLYFCFYKKIIDILKQGGIGSVITPRYFLESLSGKDLREYIKS
NVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKETYIDVFKIKNEDICI
NKFETLEELLKSSKFEHFNINQRLLSDEWILVNKDDETFYNKIQEKCKYS
LEDIAISFQGIITGCDKAFILSKDDVKLNLVDDKFLKCWIKSKNINKYIV
DKSEYRLIYSNDIDNENTNKRILDEIIGLYKTKLENRRECKSGIRKWYEL
QWGREKLFFERKKIMYPYKSNENRFAIDYDNNFSSADVYSFFIKEEYLDK
FSYEYLVGILNSSVYDKYFKITAKKMSKNIYDYYPNKVMKIRIFRDNNYE
EIENLSKQIISILLNKSIDKGKVEKLQIKMDNLIMDSLGI

3D structure

PDB

8vpi Quinoline-based compounds can inhibit diverse enzymes that act on DNA

Chain

Resolution

2.89 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	C	Y30 N165 Y168 H171 K172 K173 K193 Y221 S227 F253 I256 G257 F345 Q346 I431 W439 R441 K456 Y476 K511 M513 S514 Y521 P522 N523	Y3 N128 Y131 H134 K135 K136 K156 Y184 S190 F216 I219 G220 F308 Q309 I394 W402 R404 K419 Y439 K474 M476 S477 Y484 P485 N486
BS02	dna	C	K172 K179 D192 K193 I349 G351 D353 K378 K380 K420 R425 Q438 W439 Y455 K456 K515	K135 K142 D155 K156 I312 G314 D316 K341 K343 K383 R388 Q401 W402 Y418 K419 K478

External links

PDB	RCSB:8vpi, PDBe:8vpi, PDBj:8vpi
PDBsum	8vpi
PubMed
UniProt	A0A031WG99

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