Structure of PDB 8v6j Chain C

Receptor sequence
>8v6jC (length=435) Species: 8355 (Xenopus laevis) [Search protein sequence]
TGDRKGDLYPSSLQFYQHPPTENISLIEFETFAIERLKLLKAVENLGVSY
VKNSEEYSKKLELELRKLKFPYRPLHEEISDDVYDLRRKDHISHFILRLA
YCQSEDLRRWFIQQEMDLFKFRFGLLTKESVQEFLKLNDLQYVAISEDEK
NMHKEDLMNSSFGLSLTKMEDTEFYKVPFQAALDLVRPRKVFLWRGFAFI
PHKDIVSIVLNDFRAKLSKALALSARSLPVVQSDERLQPLLNHLSHSYII
SLEQIDGFAAKSFPLCMRQLHKSLRENHHLRHGGRMQYGLFLKGIGLTLE
QALQFWRLEFTKGKVDSEKFDKVYAYSIRHNYGKEGKRTDYTPYSCMKVI
LSNPPSQGDYHGCPFRHSDPELLKQKLQSFKVPSSGINQILELVKGMHYQ
LACQKYFELTHSVDDCGFSLNHPNQYFAESQKLLT
3D structure
PDB8v6j A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase
ChainC
Resolution11.11 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C M313 K349 Y353 H357 K364 T366 Y368 T369 Y371 S372 K375 M286 K322 Y326 H330 K337 T339 Y341 T342 Y344 S345 K348
BS02 dna C H306 R308 H309 R312 H279 R281 H282 R285
BS03 SF4 C P291 C293 C373 C390 C430 P264 C266 C346 C363 C403
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0006260 DNA replication
GO:0006261 DNA-templated DNA replication
GO:0006269 DNA replication, synthesis of primer
GO:0006270 DNA replication initiation
Cellular Component
GO:0005658 alpha DNA polymerase:primase complex
GO:1990077 primosome complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8v6j, PDBe:8v6j, PDBj:8v6j
PDBsum8v6j
PubMed38491139
UniProtA0A1L8G3G3

[Back to BioLiP]