Structure of PDB 8sjd Chain C

Receptor sequence
>8sjdC (length=474) Species: 7370 (Musca domestica) [Search protein sequence]
RELKTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVGAE
YGEHVNVEELLPSPITLSRKVTSDAKEKKALISREIKSAVEKDGASATID
LWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKA
IFSQFNVEDLSSIKFVTDRGANVVKSLANNIRINCSSHLLSNVLENSFEE
TPELNMPILACKNIVKYFKKANLQHRLRSSLKSECPTRWNSTYTMLRSIL
DNWESVIQILSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQTCSSP
SLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENLSIWHY
TAFFFYPPALHMQQEKVAQIKEFCLSKMEDLEVCPSDEFEFYRKEIVILS
EDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEK
RNRIGQQTVDSLLFLNSFYKNFCK
3D structure
PDB8sjd Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding.
ChainC
Resolution5.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C F109 S110 R573 F29 S30 R438
BS02 dna C R308 S309 S310 K312 R318 R228 S229 S230 K232 R238
BS03 dna C K585 R586 R588 I589 G590 T593 K450 R451 R453 I454 G455 T458
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0046872 metal ion binding
GO:0046983 protein dimerization activity
Biological Process
GO:0006357 regulation of transcription by RNA polymerase II
Cellular Component
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8sjd, PDBe:8sjd, PDBj:8sjd
PDBsum8sjd
PubMed37491363
UniProtQ25438

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