Structure of PDB 8rdu Chain C

Receptor sequence

>8rduC (length=164) Species: 34078 (Scytonema hofmannii) [Search protein sequence]

EAPDVKPWLFLIKPYEGESLSHFLGRFRRANHLSASGLGTLAGIGAIVAR
WERFHFNPRPSQQELEAIASVVEVDAQRLAQMLPPAGVGMQHEPIRLCGA
CYAESPCHRIEWQYKSVWKCDRHQLKILAKCPNCQAPFKMPALWEDGCCH
RCRMPFAEMAKLQK

3D structure

PDB

8rdu Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.

Chain

Resolution

2.3 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	C	N59 R61 M92 H94 P96 R98 K117 V119 W120 K128 K132 Q137 R153	N57 R59 M90 H92 P94 R96 K115 V117 W118 K126 K130 Q135 R151
BS02	dna	C	S36 S38 R55 H57 N59	S34 S36 R53 H55 N57
BS03	ZN	C	C133 C136 C151 C154	C131 C134 C149 C152
BS04	ZN	C	C100 C103 C122 H125	C98 C101 C120 H123

External links

PDB	RCSB:8rdu, PDBe:8rdu, PDBj:8rdu
PDBsum	8rdu
PubMed	38834066
UniProt	A0A8J0PCL5

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