Structure of PDB 8rdj Chain C

Receptor sequence
>8rdjC (length=1040) Species: 3728 (Sinapis alba) [Search protein sequence]
GTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDIDHEIEFQLFVETY
QLVEPLIKERDAVYESLTYSSELYVSAGLIWKTNRNMQEQRIFIGNIPLM
NSLGTFIVNGIYRVVINQILQSPGIYYQSELDHNGISVYTGTIISDWGGR
LELEIDKKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSF
LTDKEKKKIGSKENAILEFYQQFSCVGGDPIFSESLCKELQKKFFHQRCE
LGRIGRRNINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGMGTLDDMN
HLKNKRIRSVADLLQDQLGLALARLENVVKGTIGGAIRHKLIPTPQNLVT
STPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTAN
FRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYEL
VEKSKKAQIRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQVVPARYRQEF
LTIAWEEVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPL
SRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIILSGNENTLS
IPLIMYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNV
LVAYMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERI
TKEIPHLEGRLLRNLDKNGIVMLGSWVETGDILVGKLTPSKETCLKLPIG
GRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGII
SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDR
HYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDG
RTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQ
GGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIP
KPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEV
3D structure
PDB8rdj Structure of the plant plastid-encoded RNA polymerase.
ChainC
Resolution2.62 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C G399 R404 T405 N407 S799 G392 R397 T398 N400 S767
BS02 dna C K164 R174 K175 R404 G978 R979 R986 M990 K157 R167 K168 R397 G946 R947 R954 M958
BS03 rna C Q553 K829 H954 L970 L976 Q546 K797 H922 L938 L944
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0009507 chloroplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8rdj, PDBe:8rdj, PDBj:8rdj
PDBsum8rdj
PubMed38428394
UniProtA0A6C0M5W1

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