Structure of PDB 8qmy Chain C

Receptor sequence

>8qmyC (length=470) Species: 32630 (synthetic construct)

EHTITNWSGTHAVRPKRFFQPESVEELEKIVKEAHEKGQKIRPVGSGLSP
NGLAFSEDGMVSLALMDKVLHVDKEKKQVTVQAGARVQQVVDALRPHGLT
LQNFASISEQQIGGFIQVGAHGTGARIPPVDEQVVSMKLVTPAKGTIELS
EEKDPELFRLARCGLGALGVVTEVTLQCVPRHKLLEHTFVATMKEVKKNH
EKLLRENKHVRYMWIPYTDTVVVVTCNPLPPQYSEDEKLQPLRNLLREAE
VSGLSFTELRDALLAVDPLDTEWVKRVNQAEAEFWKRSEGYRVGWSDEIL
GFDCGGQQWVSEVAFPAGTLEKPSAADLEYMEELMRLINKEGIPAPAPIE
QRWTAGSSSPMSPAYSPSPDSVFSWVGIIMYLPTEDEEQRKAITEAFRQY
RKLCETRLWDKYGAAEHWAKIEVPEDPEELEALRERLRKRYPGVDKFNKA
RRELDPKNILSNDMIDSLFP

3D structure

• PDB: 8qmy Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase
• Chain: C
• Resolution: 1.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FAD	C	W15 R50 P51 V52 G53 S54 G55 L56 S57 L61 A62 A113 S114 I115 Q118 Q119 G122 Q125 V126 A128 H129 L173 V178 V179 R388 H453 A455	W7 R42 P43 V44 G45 S46 G47 L48 S49 L53 A54 A105 S106 I107 Q110 Q111 G114 Q117 V118 A120 H121 L165 V170 V171 R352 H417 A419

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue Dec 3 00:33:34 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8qmy', asym_id = 'C', title = 'Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8qmy', asym_id='C', title='Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003885,0016020,0016633,0016899,0050660,0071949', uniprot = '', pdbid = '8qmy', asym_id = 'C'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003885,0016020,0016633,0016899,0050660,0071949', uniprot='', pdbid='8qmy', asym_id='C')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>