Structure of PDB 8q4d Chain C

Receptor sequence
>8q4dC (length=373) Species: 1422 (Geobacillus stearothermophilus) [Search protein sequence]
MITRGEFFMIKEMYERGMSISDIARELGIDRKTVRKYIHSPNPPSKSKRK
QRKSKLDPFKPYLQKRMLEDGVFNSEKLFFEIRQQGYTGGKTILKDYMKP
FRETAKKKYTVRYETLPGEQMQVDWKEVGEVVIEGKKVKLSLFVATLGYS
RMKYAVFTTSQDQEHLMECLIQSFKYFGGVPKKVLFDNMKTVTDGREQGV
VKWNQRFSEFASYYGFIPKVCRPYRAQTKGKVERAIQYIMDHFYVGTAFE
SIEELNFLLHRWLDQVANRKPNATTGISPQERWAEESLKPLPLKDYDTSY
LSYRKVHWDGSFSYKGEQWLLSAEYAGKEILVKERLNGDIRLYFRGEEIS
HVDQQKKVISFAEKIKKKQTEMA
3D structure
PDB8q4d Molecular basis for transposase activation by a dedicated AAA+ ATPase.
ChainC
Resolution3.62 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C R35 R49 R52 S54 K55 L56 T88 G89 G90 T92 I93 R304 K305 H307 S313 Y314 K315 G316 R35 R49 R52 S54 K55 L56 T88 G89 G90 T92 I93 R304 K305 H307 S313 Y314 K315 G316
BS02 dna C D30 K50 R52 S75 E76 T92 K95 D96 K99 R102 R225 D30 K50 R52 S75 E76 T92 K95 D96 K99 R102 R225
Gene Ontology
Biological Process
GO:0006310 DNA recombination
GO:0032196 transposition

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Molecular Function
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Biological Process
External links
PDB RCSB:8q4d, PDBe:8q4d, PDBj:8q4d
PDBsum8q4d
PubMed38926614
UniProtQ45618|TRA6_GEOSE Putative transposase for insertion sequence element IS5376

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