Structure of PDB 8opm Chain C

Receptor sequence
>8opmC (length=1194) Species: 290028,559292 [Search protein sequence]
VIGDFNCTNFAINDLNTTIPRISEYVVDVSYGLGTYYILDRVYLNTTILF
TGYFPKSGANFRDLSLKGTTKLSTLWYQKPFLSDFNNGIFSRVKNTKLYV
NKTLYSEFSTIVIGSVFINNSYTIVVQPHNGVLEITACQYTMCEYPHTIC
KSIGSSRNESWHFDKSEPLCLFKKNFTYNVSTDWLYFHFYQERGTFYAYY
ADSGMPTTFLFSLYLGTLLSHYYVLPLTCNAISSNTDNETLQYWVTPLSK
RQYLLKFDDRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKP
VATVHRRIPDLPDCDIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLV
HTDSFSCNNFDESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSN
YKIDTTSSSCQLYYSLPAINVTINNYNPSSWNRRYGFNNFNLSSHSVVYS
RYCFSVNNTFCPCAKPSFASSCKSHKPPSASCPIGTNYRSCESTTVLDHT
DWCRCSCLPDPITAYDPRSCSQKKSLVGVGEHCAGFGVDEEKCGVLDGSY
NVSCLCSTDAFLGWSYDTCVSNNRCNIFSNFILNGINSGTTCSNDLLQPN
TEVFTDVCVDYDLYGITGQGIFKEVSAVYYNSWQNLLYDFNGNIIGFKDF
VTNKTYNIFPCYAGRVSAAFHQNASSLALLYRNLKCSYVLNNISLATQPY
FDSYLGCVFNADNLTDYSVSSCALRMGSGFCVDYNSYRFVTFEPFNVSFV
NDSIESVGGLYEIKIPTNFTIVGQEEFIQTNSPKVTIDCSLFVCSNYAAC
HDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVTLSSNLNTNL
HFDVDNINFKSLVGCLGPHCGSSSRSFFEDLLFDKVKLSDVGFVEAYNNC
TGGSEIRDLLCVQSFNGIKVLPPILSESQISGYTTAATVAAMFPPWSAAA
GIPFSLNVQYRINGLGVTMDVLNKNQKLIATAFNNALLSIQNGFSATNSA
LAKIQSVVNSNAQALNSLLQQLFNKFGAISSSLQEILSRLDALEAQVQID
RLINGRLTALNAYVSQQLSDISLVKLGAALAMEKVNECVKSQSPRINFCG
NGNHILSLVQNAPYGLLFMHFSYKPISFKTVLVSPGLCISGDVGIAPKQG
YFIKHNDHWMFTGSSYYYPEPISDKNVVFMNTCSVNFTKAPLVY
3D structure
PDB8opm Sialoglycan binding triggers spike opening in a human coronavirus
ChainC
Resolution3.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SIA C T82 T83 S246 T69 T70 S233
BS02 5N6 C N26 T30 T82 K84 N13 T17 T69 K71
Gene Ontology
Molecular Function
GO:0003700 DNA-binding transcription factor activity
Biological Process
GO:0006355 regulation of DNA-templated transcription
GO:0019062 virion attachment to host cell
GO:0019064 fusion of virus membrane with host plasma membrane
GO:0039654 fusion of virus membrane with host endosome membrane
GO:0046718 symbiont entry into host cell
GO:0046813 receptor-mediated virion attachment to host cell
GO:0075509 endocytosis involved in viral entry into host cell
Cellular Component
GO:0016020 membrane
GO:0019031 viral envelope
GO:0020002 host cell plasma membrane
GO:0044173 host cell endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0055036 virion membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8opm, PDBe:8opm, PDBj:8opm
PDBsum8opm
PubMed37794193
UniProtE0YJ44;
P03069|GCN4_YEAST General control transcription factor GCN4 (Gene Name=GCN4)

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