Structure of PDB 8gzg Chain C

Receptor sequence
>8gzgC (length=1049) Species: 1148 (Synechocystis sp. PCC 6803) [Search protein sequence]
DLIEIQHASFHWFLEEGLIEELNSFSPISDYTGKLELHFLGKDYKLKQPK
YDVDESKRRDASYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTERGTF
IINGAERVIVNQIVRSPGVYYKKELDKNGRRTYSASLIPNRGAWLKFETD
KNGLVYVRIKTRKLSAQVLLKAIGLSDNEILDSLHPEFYQKTLDKEGNPT
EEEALVELYKKLRPPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLR
LNEADTTRVLTPQDILAAINYLINLEFDVGTTDDIDHLGNRRVRSVGELL
QNQIRVGLNRLERIIRERMTVSESDALTPASLVNPKPLVAAIKEFFGSSQ
LSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHHGRICP
VETPEGPNAGLIGSLATCARVNDYGFIETPYFRVESGRVRKDLDPVYLTA
DEEDDMRVAPGDIPTDEEGNIIGESVPIRYRQEFSTTSPEQVDYVAVSPV
QIISVATSMIPFLEHDDANRALMGSNMQRQAVPLLRPERPLVGTGLEAQA
ARDSGMVIVSRTHGIVTYVDATEIRVQPHSGEEIVYPIQKYQRSNQDTCL
NQRPLVYAGEDVVPGQVLADGSATEGGELALGQNILVAYMPWEGYNYEDA
ILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRNL
DEHGIIRIGAWVESGDILVGKVTPKGEADQPPEEKLLRAIFGEKARDVRD
NSLRVPNGEKGRVVDVRVFTREKGDELPPGANMVVRIYVAQKRKIQVGDK
MAGRHGNKGIISRILPIEDMPYLPDGRPIDIALNPLGVPSRMNVGQVFEC
LLGWAGENLGVRFKITPFDMYGEEASRDTVHGLLEEASQRPNKDWVFNEN
HPGKIQVFDGRTGEPFDRPITVGQAYMLKLVHLVDDKIHARSTGPYSLVT
QQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDMQGRNEAL
NAIVKGKSIPRPGTPESFKVLMRELQSLGLDIAAHKVQLSEDGESADAE
3D structure
PDB8gzg Cryo-EM structure of Synechocystis sp. PCC 6803 CTP-bound RPitc
ChainC
Resolution3.13 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C R125 W154 I299 R305 L392 R396 R115 W144 I285 R291 L378 R382
BS02 dna C R117 E395 G978 K979 R986 R107 E381 G956 K957 R964
BS03 rna C P418 Q544 K821 K829 P404 Q530 K800 K808
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8gzg, PDBe:8gzg, PDBj:8gzg
PDBsum8gzg
PubMed
UniProtP77965|RPOB_SYNY3 DNA-directed RNA polymerase subunit beta (Gene Name=rpoB)

[Back to BioLiP]