Structure of PDB 8gf5 Chain C

Receptor sequence
>8gf5C (length=429) Species: 188937 (Methanosarcina acetivorans C2A) [Search protein sequence]
DTVDIYDDRGKLLESNVDIMSLAPTRNAAIKKIILDTKRSVAVSLAGIQG
ALASGKMGGKGRQILGRGLNYDLVGNADAIAENVKNLVQVDEGDDTSVKV
IKGGKSLLIQAPSSRIAAGADYMSATTVGAAAVTQTIIDMFGTDMYDAPI
AKSAVWGSYPQTMDLMGGNVQGVLSIPQNNEGLGFSLRNIMANHIAAITS
RGAMNAAALSSIYEQSGIFEMGGAVGMFERHQLLGLACQGLNANNVVYDI
VKENGKDGTIGTVIESIVGRAVEDGVISVDKTAPSGYKFYKANDVPMWNA
YAAAGTLAATFVNCGAGRAAQNVSSTLLYFNDILEKETGLPGCDYGKVQG
VAVGFSFFSHSIYGGGGPGVFNGNHVVTRHSRGFAIPCVCAAVALDAGTQ
MFTIESTSGLIGDVFGSIEEFRQPIKAVA
3D structure
PDB8gf5 McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly.
ChainC
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.8.4.1: coenzyme-B sulfoethylthiotransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 COM C F359 Y365 F357 Y363
BS02 F43 C S363 I364 Y365 S361 I362 Y363
BS03 TP7 C F359 F360 Y365 G366 H377 F357 F358 Y363 G364 H375
Gene Ontology
Molecular Function
GO:0016740 transferase activity
GO:0050524 coenzyme-B sulfoethylthiotransferase activity
Biological Process
GO:0015948 methanogenesis

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Molecular Function
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Biological Process
External links
PDB RCSB:8gf5, PDBe:8gf5, PDBj:8gf5
PDBsum8gf5
PubMed37307484
UniProtQ8THG7

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