Structure of PDB 8fyb Chain C

Receptor sequence
>8fybC (length=309) Species: 906 (Megasphaera) [Search protein sequence]
AGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIP
AAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARS
TRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARV
RRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVV
AALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDI
GQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEK
LVPYGVNYS
3D structure
PDB8fyb Genome expansion by a CRISPR trimmer-integrase.
ChainC
Resolution3.1 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C N33 R34 V35 D36 S37 S67 R69 N32 R33 V34 D35 S36 S66 R68
BS02 dna C I6 K9 R34 R69 E72 L293 Y305 G306 V307 N308 Y309 I5 K8 R33 R68 E71 L292 Y304 G305 V306 N307 Y308
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 08:54:41 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8fyb', asym_id = 'C', title = 'Genome expansion by a CRISPR trimmer-integrase.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8fyb', asym_id='C', title='Genome expansion by a CRISPR trimmer-integrase.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003676,0004519,0004520,0043571,0046872,0051607', uniprot = '', pdbid = '8fyb', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0004519,0004520,0043571,0046872,0051607', uniprot='', pdbid='8fyb', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>