Structure of PDB 8fhj Chain C

Receptor sequence

>8fhjC (length=532) Species: 743836 (Methylocystis sp. SB2)

SVERVPVLIVGAGYAGLSAATLLAWRGVPCRLVERRASTSRLPKAHGINR
RSMEVLRVVPGLEDALFAASRAGANESTLIIAESVTSPPIETLVTKISLD
ATPVSPSRICTAGQDRVEPVLLRFARENGADVRFSTTLERFSQRDDGVDA
ILRDEASGQETTVLADYMIAADGAGGTIRDVGGVKMEGPGVLADTISVLF
EADLDSILPGGGFALYYLRNPAFSGAFVTCDEPNHGQINIEYDSTRDQAS
DFDEERCEALVRQSLGVADLAVKILDIRPWQMAALLADRMSFGRVFLAGD
CAHITPPVGGLGGQTAIQDAADLAWKLALVVKGQAAPTLLDSYEIERRPV
ARIAIARSIANYVERLLPDRQDIRIREDEYGLLETAMGYRYRSDAIIADE
FDDGACVEDPLRPSGAPGTRLAHVWLRRGEETISSHDLIGRDFMLFTGPD
GGDWIEAARRIALRSKAPLGVCRLGFDVDDPEGLFLPRLRISPEGALLVR
PDGYIAWRSRGRSPDPFATLEASFARVRGFDT

3D structure

• PDB: 8fhj Crystal structure of MbnF: an NADPH-dependent flavin monooxygenase from Methylocystis strain SB2.
• Chain: C
• Resolution: 2.61 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FAD	C	V11 G12 G14 A16 E35 R36 R37 R42 K45 A46 H47 Q115 T138 L139 D173 G174 N240 W281 G300 D301 P308 G311 G313 G314 Q315	V10 G11 G13 A15 E34 R35 R36 R41 K44 A45 H46 Q114 T137 L138 D172 G173 N239 W280 G299 D300 P307 G310 G312 G313 Q314

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 23 12:19:40 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8fhj', asym_id = 'C', title = 'Crystal structure of MbnF: an NADPH-dependent flavin monooxygenase from Methylocystis strain SB2.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8fhj', asym_id='C', title='Crystal structure of MbnF: an NADPH-dependent flavin monooxygenase from Methylocystis strain SB2.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0016491,0071949', uniprot = '', pdbid = '8fhj', asym_id = 'C'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016491,0071949', uniprot='', pdbid='8fhj', asym_id='C')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>