Structure of PDB 8axf Chain C

Receptor sequence

>8axfC (length=262) Species: 1980427 (Emaravirus fici) [Search protein sequence]

SDLKPIDVEVQAFTSASQNISNFTLHKYRNICHVDTCAAHLSKSKENKEK
LQARNLRLIVSSNEFLVVVKELNDSTVDNVVSFNKACAIMSAGVLKHTFD
EEFDWKLSKYVKTNNTTKVIPDVKIINRLAGQMGLSAGNPYYWMIVPGYE
FLYELYPAEVLAYTLVRLQYRKNLNIPDSMTDADIVSSLVMKMNRIHKLE
QTSFDEALNLIGKDNVSEAYVELARDIGSTSKTKRNDEAILKFRELIASF
LPALEADRIASA

3D structure

PDB

8axf RNA Encapsulation Mode and Evolutionary Insights from the Crystal Structure of Emaravirus Nucleoprotein.

Chain

Resolution

2.54 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	C	Q68 K95 K120 E121 N123 S132 N134 K135 I176 R178 L179 G181 Q182 P197 F201 R217 L224 N225 P227 M230 M241 K242 N244 R245 G278 T280 K282 R285	Q18 K45 K70 E71 N73 S82 N84 K85 I126 R128 L129 G131 Q132 P147 F151 R167 L174 N175 P177 M180 M191 K192 N194 R195 G228 T230 K232 R235

Gene Ontology

	Cellular Component
GO:0019013	viral nucleocapsid

View graph for
Cellular Component

External links

PDB	RCSB:8axf, PDBe:8axf, PDBj:8axf
PDBsum	8axf
PubMed	37039649
UniProt	I2FFM8

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