Structure of PDB 7y6x Chain C

Receptor sequence
>7y6xC (length=76) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
RRGSGGGVCGSVWGQNDIAYRCRTCENDPTCAICVPCFQNGDHNSHDYSI
IYTGGGCCDCGDETAWKPDGFCSNHK
3D structure
PDB7y6x Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance
ChainC
Resolution2.196 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN C C149 C172 C184 H187 C37 C60 C72 H75
BS02 ZN C C121 C146 C149 C170 C9 C34 C37 C58
BS03 ZN C C134 C137 H155 H158 C22 C25 H43 H46
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding
GO:0061630 ubiquitin protein ligase activity
Biological Process
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7y6x, PDBe:7y6x, PDBj:7y6x
PDBsum7y6x
PubMed
UniProtF4KCC2|PRT6_ARATH E3 ubiquitin-protein ligase PRT6 (Gene Name=PRT6)

[Back to BioLiP]