Structure of PDB 7vd5 Chain C

Receptor sequence
>7vd5C (length=451) [Search protein sequence]
IAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGLMVFWAGAMVLFEV
SHFVPEKPTYEQGFILIQHLATLGYGIGPGGEITSTVPYFAVGVIHLISS
AILGFGGIYHSLLGPDTLEESFPFFGYDWRDKNKMTTILGIHLCLLGLGS
FLLVIKAMYLGGVYDTWAPGGGDVRYITTPTLNPIVIFGYVFRSPFGGDG
WVVSVNNMEDVIGGHIWVGILCITGGIWHIFTKPFAWARRAFVWSGEAYL
SYSLAAISLMGFTAALYSWYNNTAYPSELYGPTGPEASQAQAFTFLVRDQ
RLGANVSSAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGP
NGLDINKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSP
RSWLCCSHFFLAFFFLVGHWWHSGRARAAAAGFEKGINRANEPVLSMRPI
D
3D structure
PDB7vd5 Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex
ChainC
Resolution2.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 OEX C E352 R355 E332 R335
BS02 CLA C L166 S170 L173 H235 V238 M280 Y287 A294 Y295 L146 S150 L153 H215 V218 M260 Y267 A274 Y275
BS03 CLA C W61 H89 I277 M280 A284 Y295 L424 H428 L431 F435 W41 H69 I257 M260 A264 Y275 L404 H408 L411 F415
BS04 CLA C M58 V59 A62 V66 L90 L93 V112 H116 M38 V39 A42 V46 L70 L73 V92 H96
BS05 CLA C W61 M65 F68 G83 F84 I85 W423 L424 F434 W41 M45 F48 G63 F64 I65 W403 L404 F414
BS06 CLA C Y272 A275 H439 W440 S443 R447 Y252 A255 H419 W420 S423 R427
BS07 CLA C L159 L163 L241 G245 W248 H249 K253 P254 F255 W257 L139 L143 L221 G225 W228 H229 K233 P234 F235 W237
BS08 CLA C M155 L159 H162 L166 F262 W264 Y269 Y272 S273 A276 M135 L139 H142 L146 F242 W244 Y249 Y252 S253 A256
BS09 CLA C W34 S35 G36 N37 A38 L270 L274 F434 F435 G438 W441 H442 R445 W14 S15 G16 N17 A18 L250 L254 F414 F415 G418 W421 H422 R425
BS10 CLA C N37 L47 A50 H51 H54 G266 E267 Y269 L270 S273 N17 L27 A30 H31 H34 G246 E247 Y249 L250 S253
BS11 CLA C H54 L57 M58 W61 F435 H34 L37 M38 W41 F415
BS12 CLA C W33 G36 N37 R39 L40 A50 I128 L132 W13 G16 N17 R19 L20 A30 I108 L112
BS13 CLA C H51 F144 F145 I158 I161 H162 L165 H31 F124 F125 I138 I141 H142 L145
BS14 CLA C L48 I122 G126 Y129 H130 F142 F145 L28 I102 G106 Y109 H110 F122 F125
BS15 CLA C V59 Y95 P108 A111 I115 H116 S119 V39 Y75 P88 A91 I95 H96 S99
BS16 CLA C F212 W257 F192 W237
BS17 CLA C T252 F255 T232 F235
BS18 CLA C F251 T252 F231 T232
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0005737 cytoplasm
GO:0009521 photosystem
GO:0009523 photosystem II
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7vd5, PDBe:7vd5, PDBj:7vd5
PDBsum7vd5
PubMed
UniProtA0A679BVV7

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