Structure of PDB 6zmy Chain C

Receptor sequence

>6zmyC (length=137) Species: 9103 (Meleagris gallopavo)

LSAADKNNVKGIFTKIAGHAEEYGAETLERMFITYPPTKTYFPHFDLSHG
SAQIKGHGKKVVAALIEAANHIDDIAGTLSKLSDLHAHKLRVDPVNFKLL
GQCFLVVVAIHHPAALTPEVHASLDKFLCAVGTVLTA

3D structure

• PDB: 6zmy Structural studies of hemoglobin from two flightless birds, ostrich and turkey: insights into their differing oxygen-binding properties.
• Chain: C
• Resolution: 1.655 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	HEM	C	Y42 F43 H45 H58 L83 L86 H87 L91 N97 F98 L101 L136	Y41 F42 H44 H57 L82 L85 H86 L90 N96 F97 L100 L135

Gene Ontology

Molecular Function

• GO:0004601 peroxidase activity
• GO:0005344 oxygen carrier activity
• GO:0005506 iron ion binding
• GO:0019825 oxygen binding
• GO:0020037 heme binding
• GO:0031720 haptoglobin binding
• GO:0043177 organic acid binding
• GO:0046872 metal ion binding

Biological Process

• GO:0015671 oxygen transport
• GO:0042744 hydrogen peroxide catabolic process
• GO:0098869 cellular oxidant detoxification

Cellular Component

• GO:0005833 hemoglobin complex
• GO:0031838 haptoglobin-hemoglobin complex
• GO:0072562 blood microparticle

External links

• PDB: RCSB:6zmy, PDBe:6zmy, PDBj:6zmy
• PDBsum: 6zmy
• PubMed: 33950023
• UniProt: P81023|HBA_MELGA Hemoglobin subunit alpha-A (Gene Name=HBAA)