Structure of PDB 6ytt Chain C

Receptor sequence

>6yttC (length=630) Species: 1341692 (Clostridium autoethanogenum DSM 10061)

EEKAKSIDQATLQLLDKAKQDGVETVWDRKADMKVQCGFGSAGVCCRNCS
MGPCRVSPVPGKGVERGICGATADVIVSRNFARMVAAGTAAHSDHGRSIA
LSLYHTSKDGDIKVKDENKLKEVAKSFNVETEGRDIYDIAHDVAKEGLSN
YGKQLGEVTLPPSLPEKRKELWRKLGVYPRAVDREIAAVMHSTHIGCNAD
AEAMIKMSMRCSLTDGWMGSFMGTEFSDIMFGTPHSIDTEANLGVLEKNS
VNVVLHGHEPLLSEMVVEAASDPELVELAKSVGADGINLCGMCCTGNEVS
MRHGIKIAGNFMQQELAVVTGAVDGLIVDVQCIMPALAKLSKSYHTKFIT
TSPKAHITDSIYMEFDEENPLDSAKKILKEAILNFKNRDQSKVMIPELKC
KAILGYSVEEIINKLDKVVNTQIGPMQTVKPLADVLVSGVLRGAAAVVGC
NNPKVVQDSAHIETIKGLIKNDVIVVVTGCAAQAAAKYGLLQKEAAEKYA
GPGLATVCKLVDIPPVLHMGSCVDISRILDLVGRVANLLGVDMSDLPVAG
VAPEWMSEKAVAIGTYVVTSGIDTWLGVAPPVTGGPEVVDILTNKMEDWV
GAKFFIETDPHKAVEQIVNRMNEKRKKLGI

3D structure

• PDB: 6ytt Gas channel rerouting in a primordial enzyme: Structural insights of the carbon-monoxide dehydrogenase/acetyl-CoA synthase complex from the acetogen Clostridium autoethanogenum.
• Chain: C
• Resolution: 3.01 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	SF4	C	C38 G41 C46	C37 G40 C45
BS02	SF4	C	C47 C50 C55 I69 C70 R80 I196	C46 C49 C54 I68 C69 R79 I195
BS03	XCC	C	H259 C295 C333 G450 C451 C481 C523	H258 C294 C332 G449 C450 C480 C522

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 20:47:15 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6ytt', asym_id = 'C', title = 'Gas channel rerouting in a primordial enzyme: St...x from the acetogen Clostridium autoethanogenum. '

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6ytt', asym_id='C', title='Gas channel rerouting in a primordial enzyme: St...x from the acetogen Clostridium autoethanogenum. ')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003824,0006091,0016151,0016491,0043885,0051539', uniprot = '', pdbid = '6ytt', asym_id = 'C'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0006091,0016151,0016491,0043885,0051539', uniprot='', pdbid='6ytt', asym_id='C')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>