Structure of PDB 6ypt Chain C

Receptor sequence
>6yptC (length=145) Species: 12154 (Turnip yellow mosaic virus) [Search protein sequence]
LPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTL
NCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALA
HLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRL
3D structure
PDB6ypt X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin
ChainC
Resolution3.663 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.1.1.-
2.7.7.48: RNA-directed RNA polymerase.
3.4.19.12: ubiquitinyl hydrolase 1.
3.4.22.-
3.6.4.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GVE C C783 H869 C52 H138
Gene Ontology
Molecular Function
GO:0004197 cysteine-type endopeptidase activity
Biological Process
GO:0016032 viral process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6ypt, PDBe:6ypt, PDBj:6ypt
PDBsum6ypt
PubMed
UniProtP10358|POLR_TYMV RNA replicase polyprotein

[Back to BioLiP]