Structure of PDB 6y87 Chain C

Receptor sequence
>6y87C (length=454) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence]
NPPQRIVFVGLGTIAQSFLPLLSKVHDLSTLEIYAIDPKTPPLIEYFANS
FGLKFINSAIDQINYRDILVPILGEGTVLINLSTDVSSLALIELCRSAGA
LYLDTCIEPWKGGYDDPTIPLHKRTNYHLREQMLSLKKRLGSGVTALVAH
GANPGLVSHFVKRALLDLAEEILGDCKKPSNKEQWAILSQRLGVKVIHVA
EYDSQISQKSRERGEFVNTWSVHGFISESQQPAELGWGSHERSLPTDASM
HTDGCGAAIYIEKPGASVRVKTWTPFNGPSLGYLVTHHEAISIADFLTLR
TADETYRPTVHYAYRPSDEAILSVHEWFGNDCMTPEKTKVLRPGDILSGS
DYLGVLLMGHEKSSYWYGSILSIEKAKELATLNTATTLQVAAGVLSGYLW
ILSHPSAGIIEAEDMDHEVALSYISQYLGELKGVYSDWNPTKNDSPWLFS
NFVL
3D structure
PDB6y87 Structural and catalytic characterization of Blastochloris viridis and Pseudomonas aeruginosa homospermidine synthases supports the essential role of cation-pi interaction.
ChainC
Resolution2.15 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.5.1.44: homospermidine synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD C G17 T18 I19 D42 P43 I65 L87 S88 T89 V91 T110 C111 A157 N158 P159 S226 V395 G12 T13 I14 D37 P38 I60 L82 S83 T84 V86 T105 C106 A152 N153 P154 S221 V390
BS02 PUT C N158 E206 W225 H292 N153 E201 W220 H287
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016740 transferase activity
GO:0047296 homospermidine synthase activity

View graph for
Molecular Function
External links
PDB RCSB:6y87, PDBe:6y87, PDBj:6y87
PDBsum6y87
PubMed34605434
UniProtQ6X2Y9

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