Structure of PDB 6wkn Chain C

Receptor sequence
>6wknC (length=606) Species: 10116 (Rattus norvegicus) [Search protein sequence]
FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA
VLNLQDGVNACIMPLLQIDKDSGNPKLLVNAQCTDEFYQGHSALHIAIEK
RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD
VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL
LQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGPYQ
PLSRKFTEWCYGPVRVSLYDLSSVDSWEKNSVLEIIAFHCKSPNRHRMVV
LEPLNKLLQEKWDRLVSRFFFNFACYLVYMFIFTVVAYHQPFGESMLLLG
HILILLGGIYLLLGQLWYFWRRRFMDSYFEILFLLQALLTVLSQVLRFME
TEWYLPLLVLSLVLGWLNLLYYTRGFQHTGIYSVMIQKVILRDLLRFLLV
YLVFLFGFAVALVSLSREARYRSILDASLELFKFTIGMGELAFQEQLRFR
GVVLLLLLAYVLLTYVLLLNMLIALMSETVNHVADNSWSIWKLQKAISVL
EMENGYWWCRRKKHREGRLLKVGTRPDERWCFRVEEVNWAAWEKTLPTLS
EDPSGP
3D structure
PDB6wkn Allosteric Antagonist Modulation of TRPV2 by Piperlongumine Impairs Glioblastoma Progression.
ChainC
Resolution3.46 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 LQ4 C V543 L636 N639 V450 L517 N520
BS02 LQ4 C L513 T516 T522 Y525 L420 T423 T429 Y432
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0005261 monoatomic cation channel activity
GO:0005262 calcium channel activity
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0006811 monoatomic ion transport
GO:0006915 apoptotic process
GO:0008285 negative regulation of cell population proliferation
GO:0009266 response to temperature stimulus
GO:0045773 positive regulation of axon extension
GO:0055085 transmembrane transport
GO:0070588 calcium ion transmembrane transport
GO:0090280 positive regulation of calcium ion import
GO:0120162 positive regulation of cold-induced thermogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0012505 endomembrane system
GO:0016020 membrane
GO:0030027 lamellipodium
GO:0030424 axon
GO:0032584 growth cone membrane
GO:0042470 melanosome
GO:0044295 axonal growth cone
GO:0044297 cell body

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6wkn, PDBe:6wkn, PDBj:6wkn
PDBsum6wkn
PubMed34079902
UniProtQ9WUD2|TRPV2_RAT Transient receptor potential cation channel subfamily V member 2 (Gene Name=Trpv2)

[Back to BioLiP]