Structure of PDB 6vt1 Chain C

Receptor sequence
>6vt1C (length=339) Species: 5762 (Naegleria gruberi) [Search protein sequence]
MGVRKLATIRTAGEITPIAGAEAIECCHVDGWTCVIKKGEFKQGDRGVYF
EIDSFIKEDNDRYPMLSKQVIDYEGQRGTRLRTARLRGQLSQGLFLPMDR
FPELASNQVGDDVTEILGITKWEPPISTNLSGEILGEFPTFISKTDQERV
QNLIPQIEENKGQKFEVTVKLAGSSMTVYRKDDHIGVCGRNWELRETATN
AQWHAARRNKMIEGLQFLNRNLALQGEIIGESIQGNLEKLKGQDFYLFDI
YDIDKAQYLTPIERQSLVKQLNDNGFTVKHVPILDDLELNHTAEQILAMA
DGPSLNKNVKREGLVFKRLDGKFSFKAISNAYLEKHKDR
3D structure
PDB6vt1 Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
ChainC
Resolution2.381 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP C T145 K170 L171 S175 E227 F248 V281 V315 K326 T145 K170 L171 S175 E227 F248 V281 V315 K326
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6vt1, PDBe:6vt1, PDBj:6vt1
PDBsum6vt1
PubMed32315072
UniProtD2W2Z5

[Back to BioLiP]