Structure of PDB 6vm6 Chain C

Receptor sequence
>6vm6C (length=439) Species: 525244 (Acinetobacter sp. ATCC 27244) [Search protein sequence]
GAIARVGFGYQDAFVLRSLPLWLSQSAFSHIVSEALSDIEVCYFSSEKSL
HVMYEAKNHSLTATEFWDEIRRFKSLFDTHPKNFIWFNLVCPSYNTAISP
LISKIDRLRVSVNGRSEYLDWCVGKKIDFSLAEFALDYVGFITFNSENSE
SIFLSEIQDTINIELLRSQVKQLKDQFKNLISRSSFGPIYRKDFENFICH
ALEEDRSQWLLDPIKINLSASSSQYQDLNLDISDFNGPDRAQKTSSDWNS
LIKKAVSIGDFIHNSGDRRTLLIDGKQRMSTACMLGYVFSATRNFLLEIE
HNGLIYRTDDHKQKEGQFFTKIEAVEPQGETEAIVAIGFPTAIGKDIDST
INEVKSLPRLNLESSHAIDNMETLNLAVREAKSALVSFKSENKLSKLHLF
IKAPSVFAMVLGHRLNGICDIQLYDWVDGQYIPTAELNL
3D structure
PDB6vm6 CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.
ChainC
Resolution2.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna C N259 K299 Q300 R301 M302 H324 D369 A390 I391 K425 P427 S428 W449 Y454 N236 K276 Q277 R278 M279 H301 D346 A367 I368 K402 P404 S405 W426 Y431
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0004518 nuclease activity
GO:0004519 endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0051607 defense response to virus

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6vm6, PDBe:6vm6, PDBj:6vm6
PDBsum6vm6
PubMed32544385
UniProtC0VHC9|CAP4_ACIS2 CD-NTase-associated protein 4 (Gene Name=cap4)

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