Structure of PDB 6vbw Chain C

Receptor sequence

>6vbwC (length=339) Species: 666 (Vibrio cholerae) [Search protein sequence]

MKLPTNLAYERSIDPSDVCFFVVWPDDRKTPLTYNSRTLLGQMEAASLAY
DVSGQPIKSATAEALAQGNPHQVDFCHVPYGASHIECSFSVSFSSELRQP
YKCNSSKVKQTLVQLVELYETKIGWTELATRYLMNICNGKWLWKNTRKAY
CWNIVLTPWPWNGEKVGFEDIRTNYTSRQDFKNNKNWSAIVEMIKTAFSS
TDGLAIFEVRATLHLPTNAMVRPSQVFTEQNSRVFQSTTIDGERSPILGA
FKTGAAIATIDDWYPEATEPLRVGRFGVHREDVTCYRHPSTGKDFFSILQ
QAEHYIEVLSANKTPAQETINDMHFLMANLIKGGMFQHK

3D structure

PDB

6vbw Structure-function insights into the initial step of DNA integration by a CRISPR-Cas-Transposon complex.

Chain

Resolution

3.2 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	C	T5 N6 S47 Q67 G68 N69 P70 H71 E229 M346 Q348 K350	T5 N6 S47 Q67 G68 N69 P70 H71 E229 M335 Q337 K339
BS02	rna	C	Y9 E10 R11 L39 L40 G41 V73 Q225 F227 K263 A266 R283 R291 K343 G345 M346	Y9 E10 R11 L39 L40 G41 V73 Q225 F227 K252 A255 R272 R280 K332 G334 M335

External links

PDB	RCSB:6vbw, PDBe:6vbw, PDBj:6vbw
PDBsum	6vbw
PubMed	31925391

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