Structure of PDB 6ted Chain C

Receptor sequence
>6tedC (length=258) Species: 9823 (Sus scrofa) [Search protein sequence]
PYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQ
IDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEF
TLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRQDDILIVKLRKGQELRLR
AYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELD
EDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQ
LSHEIQSD
3D structure
PDB6ted Structure of complete Pol II-DSIF-PAF-SPT6 transcription complex reveals RTF1 allosteric activation.
ChainC
Resolution3.1 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN C C88 C90 C94 C97 C87 C89 C93 C96
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0046983 protein dimerization activity
Biological Process
GO:0006351 DNA-templated transcription
GO:0006366 transcription by RNA polymerase II
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005665 RNA polymerase II, core complex
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6ted, PDBe:6ted, PDBj:6ted
PDBsum6ted
PubMed32541898
UniProtI3LCH3

[Back to BioLiP]